6th Special Track on

Grid and Cloud Computing in

Biomedicine and Life Sciences

Porto, Portugal, 20-22 June 2013

Conference Web Site: CBMS 2013

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Life sciences researchers routinely deal with large data to be analyzed by applications that need considerable computing power, including advanced parallel and distributed infrastructures, such as grids/clouds, clusters, and many-cores, multi-cores and FPGA architectures.
Managing these data, typically terabytes or petabytes in size (usually referred to as Big Data), and optimizing the applications for these architectures is one of the challenges that must be tackled. At the same time, Big Data issues are three-dimensional, covering their increasing volume, variety and velocity. Therefore, there is a clear need for design and implementation of new scalable approaches for dealing with the associated information overload and cognitive complexity issues.
High-throughput techniques for DNA sequencing, gene expression analysis, healthcare data analysis, etc., have led to an exponential increase in the volume of biological data, which in turn are geographically spread in several laboratories and data repositories.

Other questions, such as climate change impact on the life sciences, and the disciplines to address them, are adding to the deluge of data: many prevalent human diseases are linked to climate fluctuations, from heat stress, cardiovascular mortality and respiratory illnesses due to heat waves, to altered transmission of infectious diseases and malnutrition connected to crop failures.

Bringing together and correlating data among different and heterogeneous data sources will allow inference of new knowledge from these databases. There is a tremendous potential for end-users in many fields of life sciences, to routinely conduct large scale computations on distributed resources by using a combination of the following technologies:

  • Distributed middleware for connecting data/cluster computing centers: this includes grid computing middleware for users' authentication and accounting, remote job submission, resource scheduling/reservation, and data management;

  • Virtualization technologies capable of providing on demand application-specific execution environments: this involves a style of computing, cloud computing, in which on-demand resources are provided as a service over the Internet.

Grid for the Life Sciences is an environment that allows sharing of resources, in which heterogeneous and dispersed health data as well as applications can be accessed by all users as a tailored information providing system according to their authorization.

Cloud computing is emerging as a model for enabling convenient, on demand network access to a shared pool of configurable resources that can be rapidly provisioned and released with minimal management effort or service provider interaction.
Institutions and medical professionals who frequently do not have enough storage and computing resources can manage their biomedical information through applications built on top of these types of services, accessing advanced computing infrastructures that they could not afford otherwise.
While many companies, like Google, IBM, Amazon, and Microsoft, were early adopters of cloud computing, its application to biomedicine has been only recently proposed, mainly for bioinformatics applications. Several reviews and research papers have reported on these, while in contrast, applications in medical informatics have been infrequent. Now, medical applications are increasingly proposed and implemented, though reports are still scarce from a research and academic perspective.

The main goal of the track is to exchange ideas and results related to on going big data, grid and cloud computing research in Biomedicine, Life Sciences and correlated disciplines, such as Climate Change, that impact on human health, focusing on different aspects of middleware, technologies and applications.

For more details, have a look at Call for Papers and Paper Submission.

 

 

[CBMS 2013]